Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKIIAVDLDGTLLHNNNTISDYTADTLRKVQAQGHKVIITTGRPYRMALAHY-LR-LDLKTPMINFNGALTHIPEKKWAFERSATIDKKLLLETLNLSDAIQADFIASEYRKNFYITMDNRDKINPQLFGV---NEITDKMALDVTKI--TRNPNALLMQTRHKDKYELAKELRQHFNHELEVDSWGGPLNILEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLPYADQQIQWTNEEDGVAKTLEKLLL |
| 1NF2 Chain:A ((1-262)) | -MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLSR-KCYVVFASGRMLVST-LNVEKKYFKRTFPTIAYNGAIVYLPE-EGVIL-NEKIPPEVAKDIIEYIKPLNVHWQAY-IDDVLYSEKDNE---EIKSYARHSNVDYRVEPNL--SELVSKMGTTKLLLIDTPERLDELKEILSERFKDVVKV-FKS-FPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIV-TLTNNDSGVSYVLERIST |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82586 for 2105 contacts (-39.2/contact) +
2D Compatibility (PS) -27630 + (NN) -12104 + (LL) 1036
1D Compatibility (HY) -15200 + (ID) 3150
Total energy: -139634.0 ( -66.33 by residue)
QMean score : 0.462
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