Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDKFEWVKLIFATIAVVAILCFTVIGVQTIWTEDVVKDYNRHLTEQVYVDAAVNQNVNLVFYKRGCPYCEVGKKAVINAAGK--NQFPTFYIDVESEDGQDLVKKYQVEKAATIVQIRGGRSKRVTYAVKDRYGHYQPKRQVIKEVFND
1T00 Chain:A ((20-97))
-----------------------------------------------------NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDEN--PGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIAD----
General information:
TITO was launched using:
RESULT:
Template:
1T00.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36906 for 500 contacts (-73.8/contact) +
2D Compatibility (PS) -8022 + (NN) -899 + (LL) 5756
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -42671.0 ( -85.34 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_1T00.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T00-query.scw
PDB file :
Tito_Scwrl_1T00.pdb
: