Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------MSQ-KNNRLGYFGRQ-KQAFDDY-------VFLTKAKMKAE----RDYFAS-EGESDPERLAAQKARDQEFLKSLKKVGI-GFIAFLLFY-AIVRTVLGLW
4MYR Chain:A ((20-142))
KVDIAVFCQSEEVREAVGTAAIDRRMARATVTVKAGGMKEATALYGGVTSPNLVVVESDDGEARLMATLETLAMECVTGTKVIVIGRSNDVGLYKKLLDAGVSDYLVKPLEPMDFVAAVHRCF
General information:
TITO was launched using:
RESULT:
Template:
4MYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23619 for 503 contacts (-47.0/contact) +
2D Compatibility (PS) -8844 + (NN) -300 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -36113.0 ( -71.80 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_4MYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MYR-query.scw
PDB file :
Tito_Scwrl_4MYR.pdb
: