Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIANQTIVDIVTQVVTPAIQAPFELVDVEYEKMGGDYVLSILIDKPGGITVEDTAQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKTAEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFDGETLTIDYMD----KTR--HKTVDIPYQTVAKARLAVKL
2RM4 Chain:A ((5-67))
-----------------------------------------------------------------------------------------------DQDWIGCAVSIACDEV---LGVFQGLIKQISAEEITIVRAFRNGVPLRKQNAEVVLKCTDIRSIDLIEPA
General information:
TITO was launched using:
RESULT:
Template:
2RM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38013 for 330 contacts (-115.2/contact) +
2D Compatibility (PS) -5957 + (NN) 521 + (LL) 6888
1D Compatibility (HY) -4000 + (ID) 450
Total energy: -41011.0 ( -124.28 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_2RM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RM4-query.scw
PDB file :
Tito_Scwrl_2RM4.pdb
: