Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MKKTYRVKSDKDFQMIFSRGKNVANR------KFVIYYLEKEQKHFRVGISVSKKLG--NAVVRNAIKRKIRHVLLSQKTALQDYDFVVIARKGVEELNYQAL-EKNLIHVLKIAGLI
2ABY Chain:A ((1-122))
MQKGLEIAFQTINGLDESLVQALAGVTASDFPDLDIKYNIFLVDLYGQKYFRILFQSKKLSELHPEERKKVREKFDENSRMQYSELMTKYHDLKKQGKIKDRPVKEVHEEYDLWEDPIWQYI
General information:
TITO was launched using:
RESULT:
Template:
2ABY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25997 for 685 contacts (-38.0/contact) +
2D Compatibility (PS) -11420 + (NN) 1816 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -37551.0 ( -54.82 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_2ABY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ABY-query.scw
PDB file :
Tito_Scwrl_2ABY.pdb
: