Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKTDTPDYKPSIYSLTRDELIAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQYYGLSVCVTTQVGCNIGCTFCASGLIKK-----QRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGI-GEPFDN-YTNVLKFLRTVNDDNGLAIGARHITVSTSGLAH--KIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKL---SYVNLIPYNPVSEHDQ---YSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAKVGR |
| 1R30 Chain:A ((72-274)) | -------------------------------------------------------------------------------------------------------------------KTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA--------AGSTRFCMGAAWKNPHERDMPYLEQMVQGV-KAMGL-----EACM-TLGTLSESQAQRLANAG-LDYYNHNLDT-SPEFYGNIITT---RTYQERLDTLEKVRD-AGIKVCSG--GIVGLGETVKDRAGLLLQLAN--LPTPPESVPINMLVKVKG-TPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R30.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85799 for 1434 contacts (-59.8/contact) +
2D Compatibility (PS) -20580 + (NN) -10249 + (LL) 10152
1D Compatibility (HY) -2000 + (ID) 1250
Total energy: -109726.0 ( -76.52 by residue)
QMean score : 0.430
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