Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDS--LQLDAL-QGDLPNGIQKQDIFKTLALIGD--KTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQKHNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
1DBU Chain:A ((2-157))
---------TPAIDLLKKQKIPFILHTYDHDPNDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGVKKVEMADKDAAQKSTGYLVGGISPLGQ--KKRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGAEFTDIVD
General information:
TITO was launched using:
RESULT:
Template:
1DBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76181 for 1186 contacts (-64.2/contact) +
2D Compatibility (PS) -15913 + (NN) -2936 + (LL) 844
1D Compatibility (HY) -4800 + (ID) 2400
Total energy: -101386.0 ( -85.49 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1DBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBU-query.scw
PDB file :
Tito_Scwrl_1DBU.pdb
: