Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRRRIKPIVVAVFFSLFGLLLIIGHLHSTNTLKKELVEAKKTIPSVKASKVPQKSTSSKDKEFVLKPIIDVSGWQLPKEIDYDTLSKNISCVVIRVFGGSKISKTNNAAYTTGIDKSFKTHIKEFQKRNIPVAVYSYALGSSVKEMKEEAQIFYKNAAPYKPTFYWIDVEEETMSNMNKGVQAFRKELKRLGAKNVGIYIGTYFMTEQGISVKGFDAVWIPTYGSDSGYYEAAPQTELKYDLHQYTSQGYLPGFNQPLDLNQIAVNKDKKKTYEKLFGKVKE |
2NW0 Chain:A ((1-189)) | -----------------------------------------------------------------GYIVDMSKWN--GSPDWDTAKGQLDLVIARVQDGSNYV-----------DPVYKDYVAAMKARNIPFGSYAFCRFVSVEDAKVEARDFWNRGDK-DSLFWVADVEVTTMSDMRAGTQAFIDELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAY---------PCDLWQYDEYGQVPGIG-KCDLNRLNGDKS----LDWFTGKGEE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NW0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84740 for 1573 contacts (-53.9/contact) +
2D Compatibility (PS) -20841 + (NN) -11984 + (LL) 7252
1D Compatibility (HY) -12400 + (ID) 3550
Total energy: -126263.0 ( -80.27 by residue)
QMean score : 0.528
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