Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLWHQDIIELLPRQQLLGQHRECCALRG------NGWGRKHETVDY-------------------------VFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK-----
3PVI Chain:A ((2-157))
---SHPDLNKLLELWPHIQEYQDLALKHGINDIFQGNGGKLLQVLLITGLTVLPGREGNDAVDNAGQEYELKSINIDLTKGFSTHHHMNPVIIAKYRQVP--WIFAIYRGIAIEAIYRLEPKDLEF-YYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY
General information:
TITO was launched using:
RESULT:
Template:
3PVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29194 for 680 contacts (-42.9/contact) +
2D Compatibility (PS) -12727 + (NN) 494 + (LL) 512
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -47165.0 ( -69.36 by residue)
QMean score : 0.094
(partial model without unconserved sides chains):
PDB file :
Tito_3PVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PVI-query.scw
PDB file :
Tito_Scwrl_3PVI.pdb
: