Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKRITLAVTGSISAYKAADLTSQLTKI-GYDVHIIMTQAATEFITPLTLQVLSKNPIHLDVMDEHNPKIINHIELA-KRTDLFIVAPASANTIAHLAYGFADNIVTSVAL-AMPDETPKLIAPAMNTKMYHNTITQRNIDILKKIGYQEIEPRISLLACGDTGQGALADISTILKCIQEVAN
1SBZ Chain:A ((1-168))
--MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPA-DQAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPR---EMPLSTIHLENMLALSRMGVAMVPPMPAF-------YNHPETVDDIVHHVVARVL
General information:
TITO was launched using:
RESULT:
Template:
1SBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88286 for 1343 contacts (-65.7/contact) +
2D Compatibility (PS) -17529 + (NN) -1325 + (LL) 460
1D Compatibility (HY) -4800 + (ID) 1750
Total energy: -113230.0 ( -84.31 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_1SBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SBZ-query.scw
PDB file :
Tito_Scwrl_1SBZ.pdb
: