Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYSFEELLATMTLITAAEIEDKIDSNQDFVLFIGRISCPFCHLFVPKIVEVADED--EFELFHLDSEDFDHWTANKEFRNKYDIPTVPGLMVVKNG-TI-KVKCDSKMTKEEIREFIG
1NSW Chain:A ((4-100))
------------TLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP------ETTSQFGIMSIPTLILFKGGRPVKQLI-GYQPK-EQLEAQLA
General information:
TITO was launched using:
RESULT:
Template:
1NSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67348 for 665 contacts (-101.3/contact) +
2D Compatibility (PS) -9601 + (NN) -2179 + (LL) 1920
1D Compatibility (HY) -6400 + (ID) 800
Total energy: -84408.0 ( -126.93 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1NSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NSW-query.scw
PDB file :
Tito_Scwrl_1NSW.pdb
: