Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMGLDVGSKT-----VGVAISDPLGFTAQGLEIIKIDE---ESGNFGFDRLAELVKEYKVDKFVVGLPKNMNNTSGP-RVEASQAYGDKIT----ELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVIDKLAAQLILQNYLDRMF
3PSF Chain:A ((749-856))
-KILSLTCGQGRFGADAIIAVYVNRKGDF-IRDYKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGING-PN---PKTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIR--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25439 for 602 contacts (-42.3/contact) +
2D Compatibility (PS) -9758 + (NN) 270 + (LL) 4188
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -32939.0 ( -54.72 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_3PSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PSF-query.scw
PDB file :
Tito_Scwrl_3PSF.pdb
: