Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPYIILEDQTRLYYETHGS--GTPILFIHGVLMSGQFFHKQFSVLSANYQCIRLDLRGHGESDKVLHGHTISQYARDIREFLNAMELDHVVLAGWSMGAFVVWDYLNQFGNDNIQAAVIIDQSASDYQWEGWEHGPFDFDGLKTAMHAIQTDPLPFYESFIQNMFAEPP---AETETEWMLAEILKQPAAISSTILFNQTAADYRGTLQNINVPALLCFGEDKKFFSTAAGEHLRSNIPNATLVTFPKSSHCPFLEEPDAFNSTLLSFLDGVIGKS
3OM8 Chain:A ((8-265))--FLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHA-PQRIERLVLANTSAWLGPAAQWDERI---AAVLQA-ED-MS---ETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLP-AVHLSNVEFPQAFEGAVLSFLG------


General information:
TITO was launched using:
RESULT:

Template: 3OM8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1506 -185731 -123.33 -734.11
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -123.33
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.521

(partial model without unconserved sides chains):
PDB file : Tito_3OM8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3OM8-query.scw
PDB file : Tito_Scwrl_3OM8.pdb: