Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSEKKEIATFAGGCFWCMVKPFDEQPGIEKVVSGYTGGHTENPTYEEVCSETTGHREAVQITFHPDVFPYEKLLELFWQQIDPTDAGGQFADRGSSYRAAIFYHNDKQKELAEASKQRLAESGIFKDPIVTDILKAEPFYEAEGYHQ-HFYKKNPAHYQRYRTG-SGRAGFISEHWGAK----------------------------------------
4LWL Chain:A ((6-210))---KLSIAVFALGCFWGPDAQFGSIKGVVSTRVGYAGGTTNNPSYYNLGD----HSASIEIQYDANVITYGELLNIFWNLHNPVYE-----TTNRQYMSRIFYLDDGQKSEALEMKRQIEAAN--GEKIYTEIVPLENFYLAEGYHQKYYLQNTTKLYQTLKAIYGGFGNLVRSTLAARMNGYIAGNLSIASLKEEMDLVELPEDQYEKVLSIVEEIKL


General information:
TITO was launched using:
RESULT:

Template: 4LWL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 759 -49860 -65.69 -305.89
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : -65.69
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.426

(partial model without unconserved sides chains):
PDB file : Tito_4LWL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4LWL-query.scw
PDB file : Tito_Scwrl_4LWL.pdb: