Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSHLVTAPDMLATAAAHVDEIASTLRAANAAAAGPTCNLLAAAGDEVSAATAALFSAYGREYQAVVKQAAAFHSEFTRTLEAAGNAYAHAEAANAARVSHALDTINAPIRTLLGRAPLSPNGSSGAGGLPAIAQLAAESPITALIMGGTNNPLPD-----PEYVTDINKAFIQTLFPGAVSQGLFTPEQFWPVTPDLGNLTFNQSVTEGVALLNTAVNNQL--ALDNKVVAFGYSQSATIINNYINSLMAMGSPNPDDISFVMIGSGNNPVGGLLARFPGFYIPFLDVPFNGATPANSPYPTHIYTAQYDGIAHAPQFPLRILSDINAFMGYFYVHNTYPELMATQVDNAVPLPTSPGYTGNTQYYMFLTQDLPLLQPIRDIPYAGPPIADLFQPQLRVLVDLGYADYGPGGNYADIPTPAGLFSIPNPFAVTYYLIKGSLQAPYGAIVEIGVEAGLIGPEWFPDSYPWVPSINPGLNFYFGQPQVTLLSLMSGGLGNILHLIPPPVFT |
4PSC Chain:A ((78-235)) | ----------------------------------------------------------------------------------------------------------------------------------------PCGDVTVLFARGTCDPGNVGVLVGPWFFDSLQTA-LGS--RTLGVKGVPYPASVQD--------FLSGSVQNG-INMANQIKSVLQSCPNTKLVLGGYSQGSMVVHNAASNLDAA--TMSKISAVVLFGDPYYGKP-----VA-------N------FD---AAKTLVVCHDGDNICQGGDI-------------ILLPHLTYAED----------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PSC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38318 for 1235 contacts (-31.0/contact) +
2D Compatibility (PS) -16210 + (NN) -11710 + (LL) 19356
1D Compatibility (HY) -6000 + (ID) 1550
Total energy: -54432.0 ( -44.07 by residue)
QMean score : 0.340
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