Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MIGADVPRDSQRARVYAAEAFVRTLFDRVTAHGSPTVEFFGTQLTLPPEGRFGSVASVQRYVDDVLALPAVGQNWPTVSPVRVRARRAATAAHYENHGGTGTIAVPDRHTAGWAMRELVVLHEVAHHLCQVPPPHGPEFVATVC-------TLTELVMGPEVGHVFRVVYAQEGVR
2Y9W Chain:C ((9-150))
LDLPGTRILNGANWANNSATSG-TLIIFDQSTP------------------GQDADRWLIHNYLDGYKIFNMGSNNWASVSR----------------GNTVLGVSEFDGQTCKW---SIEYSGNGEEFWIRVPREGGGGAVWTIKPASSQGPTTVFLDLLKETDPNQRIKFAV----
General information:
TITO was launched using:
RESULT:
Template:
2Y9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52071 for 947 contacts (-55.0/contact) +
2D Compatibility (PS) -13588 + (NN) -4672 + (LL) 3068
1D Compatibility (HY) -1200 + (ID) 1300
Total energy: -69763.0 ( -73.67 by residue)
QMean score : 0.135
(partial model without unconserved sides chains):
PDB file :
Tito_2Y9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y9W-query.scw
PDB file :
Tito_Scwrl_2Y9W.pdb
: