Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASAKLSRMVCLLCGFFSTGISMASSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDY---RVQKGDGGQ--LVLRRATP-------
1K0H Chain:A ((1-117))
MADFDNL----------FDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFDDPENISYAGQGVRVEG----------SSPSLFVRTDEVRQLRRGDTLTI------GEENFWVDRVSPDDGGSCHLWLGRGVPPAVNRRR
General information:
TITO was launched using:
RESULT:
Template:
1K0H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4637 for 579 contacts (-8.0/contact) +
2D Compatibility (PS) -10685 + (NN) 506 + (LL) 2200
1D Compatibility (HY) -1600 + (ID) 1400
Total energy: -15616.0 ( -26.97 by residue)
QMean score : -0.112
(partial model without unconserved sides chains):
PDB file :
Tito_1K0H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K0H-query.scw
PDB file :
Tito_Scwrl_1K0H.pdb
: