Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAETD--GPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP
1DNL Chain:A ((8-199))
-------------------------LPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
General information:
TITO was launched using:
RESULT:
Template:
1DNL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63860 for 1339 contacts (-47.7/contact) +
2D Compatibility (PS) -20939 + (NN) -11835 + (LL) 1568
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -110966.0 ( -82.87 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1DNL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DNL-query.scw
PDB file :
Tito_Scwrl_1DNL.pdb
: