Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4LUC Chain:B ((2-169))
MTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE---------------------
General information:
TITO was launched using:
RESULT:
Template:
4LUC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107462 for 1350 contacts (-79.6/contact) +
2D Compatibility (PS) -18786 + (NN) -7905 + (LL) 1696
1D Compatibility (HY) -20800 + (ID) 7900
Total energy: -161157.0 ( -119.38 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_4LUC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LUC-query.scw
PDB file :
Tito_Scwrl_4LUC.pdb
: