Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGITVLAALLACASSCGVPSFPPNLSARVVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCISNTRTYRVAVGKNNLEVEDEEGSLFVGVDTIHVHKRWNALLLR--NDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAGGDGVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQL
1GVK Chain:B ((1-238))
-----------------------------VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQ-NNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA-
General information:
TITO was launched using:
RESULT:
Template:
1GVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179520 for 2079 contacts (-86.3/contact) +
2D Compatibility (PS) -25640 + (NN) -8643 + (LL) 2220
1D Compatibility (HY) -22000 + (ID) 6200
Total energy: -239783.0 ( -115.34 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1GVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GVK-query.scw
PDB file :
Tito_Scwrl_1GVK.pdb
: