Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIEQPELASKVDMVWIVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEKGIKYKFEVYEKKD
4DDR Chain:A ((1-186))
-VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
General information:
TITO was launched using:
RESULT:
Template:
4DDR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112459 for 1399 contacts (-80.4/contact) +
2D Compatibility (PS) -19880 + (NN) -6651 + (LL) 208
1D Compatibility (HY) -26400 + (ID) 8350
Total energy: -173532.0 ( -124.04 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_4DDR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DDR-query.scw
PDB file :
Tito_Scwrl_4DDR.pdb
: