Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS
3GB9 Chain:C ((23-307))
MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST----AGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFQTVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITDKVIMDYES--------VLAAGKQAAQKLEQFVSILMASIPLP----
General information:
TITO was launched using:
RESULT:
Template:
3GB9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207013 for 2257 contacts (-91.7/contact) +
2D Compatibility (PS) -29541 + (NN) -20139 + (LL) 688
1D Compatibility (HY) -40800 + (ID) 13550
Total energy: -310355.0 ( -137.51 by residue)
QMean score : 0.760
(partial model without unconserved sides chains):
PDB file :
Tito_3GB9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GB9-query.scw
PDB file :
Tito_Scwrl_3GB9.pdb
: