Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
1RL4 Chain:A ((10-161))
-----KIVKYPDPILRRRSEEVT-NFDDNLKRVVRKMFDIMYES------------KGIGLSAPQVNISKRIIVWN-----------RIFINPSIVEQSLVKL--KLIEGCLSF-PGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDK----------
General information:
TITO was launched using:
RESULT:
Template:
1RL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52613 for 1062 contacts (-49.5/contact) +
2D Compatibility (PS) -14733 + (NN) -2719 + (LL) 2436
1D Compatibility (HY) -13200 + (ID) 2550
Total energy: -83379.0 ( -78.51 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_1RL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL4-query.scw
PDB file :
Tito_Scwrl_1RL4.pdb
: