Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRFCPSPSTSSEGTRIKKISIEGNIAAGKSTFVNILKQASEDWEVVPEPVARWCNVQSTQEEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESDCMNETEWTIYQDWHDWMNSQFGQSLELDGIIYLRATPEKCLNRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTSFDYLQEVPVLTLDVNEDFKDKHESLVEKVKEFLSTL
2NOA Chain:B ((40-280))
-------------------RIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQ---------------GGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNG---DAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQ-GQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
2NOA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96648 for 1716 contacts (-56.3/contact) +
2D Compatibility (PS) -23743 + (NN) -8419 + (LL) 1656
1D Compatibility (HY) -32000 + (ID) 10450
Total energy: -169604.0 ( -98.84 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_2NOA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NOA-query.scw
PDB file :
Tito_Scwrl_2NOA.pdb
: