Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
4MSK Chain:C ((9-211))
APEDKEYQSVEEEMQSTIREHRDG--AGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYG---------HKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPE---
General information:
TITO was launched using:
RESULT:
Template:
4MSK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67710 for 1501 contacts (-45.1/contact) +
2D Compatibility (PS) -20816 + (NN) -5799 + (LL) -740
1D Compatibility (HY) -26000 + (ID) 9600
Total energy: -130665.0 ( -87.05 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_4MSK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MSK-query.scw
PDB file :
Tito_Scwrl_4MSK.pdb
: