Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDPTVPVFGTKLTPINGREETPCYNQTLSFTVLTCIISLVGLTGNAVVLWLLGY-RMRRNAVSIYILNLAAADFLFLSFQIIRLPLRLINI----SHLIRKILVSVMTFPYFTGLSMLSAISTERCLSVLWPIWYRCRRPTHLSAVVCVLLWGLSLLFSMLEWRFCDFLFSGADSSWCET--------------SDFIPVAWLIFLCVVLCVSSLVLLVRILCGSR-----------KMPLTRLYVTILLTVLVFLLCGLPFGILGALIYRMHLNLE-VLYCHVYLVCMSLSSLNSSANPIIYFFVGSFRQRQNRQNLKLVLQRALQDKPEVDKGEGQLPEESLELSGSRLGP |
| 2KS9 Chain:A ((32-323)) | --------------------------IVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL--SATATKVVICVIWVLALLLAFPQGYYSTTETMP-SRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRF--R--LGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -234525 for 2015 contacts (-116.4/contact) +
2D Compatibility (PS) -26356 + (NN) -7345 + (LL) 1396
1D Compatibility (HY) -20400 + (ID) 2400
Total energy: -289630.0 ( -143.74 by residue)
QMean score : 0.234
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