Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLGRCFPPDTKEKQQLRMTKLCDPAESELSPFLITLILAVLLAEYLIGIIANGFIMAIHAAEWVQNKAVSTSGRILVFLSVSRIALQSLMMLEITISSTSLSFYSEDAVYYAFKISFIFLNFCSLWFAAWLSFFYFVKIANFSYPLFLKLRWRITGLIPWLLWLSVFISFSHSMFCINICTVYCNNSFPIHSSNSTKKTYLSEINVVGLAFFFNLGIVTPLIMFILTATLLILSLKRHTLHMGSNATGSNDPSMEAHMGAIKAISYFLILYI----FNAVALFIYLSNMFDINSLWNNLCQIIMAAYPASHSILLIQDNPGLRRAWKRLQLRLHLYPKEWTL |
| 1MKM Chain:A ((4-249)) | --------MNTLKKAFEILDFIVKNPGDVS------VSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRRF------------------------------------------------NIRDIAHDHLVDIMKRTG--------ETVHLILKDGFEGVYIDKVEGEQSIPMVSR-------------LGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVPIFDHN--------GYPVAGVSISGVARKF-----TEEKIEEYSDVLKEKAEEISRKLGY |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -270695 for 1877 contacts (-144.2/contact) +
2D Compatibility (PS) -26148 + (NN) -8756 + (LL) 8900
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -304549.0 ( -162.25 by residue)
QMean score : 0.309
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