Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKAARFVLRSAGSLNGAGLVPREVEHFSRYSPSPLSMKQLLDFGS--ENACERTSFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVE-HQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPVFNKSAFKHYQMSSEADDWCIPSREPKNLAKEVAM |
| 1GKZ Chain:A ((38-378)) | --------------------------------VRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTD--FPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE----DEKLVRYFLDKTLTSRLGIRMLATHHLALHED----KPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRIN------GHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAPMH-----------GFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREE--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193330 for 2464 contacts (-78.5/contact) +
2D Compatibility (PS) -33399 + (NN) -18946 + (LL) 5760
1D Compatibility (HY) -20000 + (ID) 4800
Total energy: -264715.0 ( -107.43 by residue)
QMean score : 0.456
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