Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAPSSAQGTTTPADASGAVPSCASK--LVTCAGYLNTTDTPP----------------------ESCCDPLKEAATTQAACMCAILMN--KAALQAFGVA-------PEQGVLLAKRCGVTNDASTCAK
1PSY Chain:A ((1-125))
-AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27471 for 595 contacts (-46.2/contact) +
2D Compatibility (PS) -9354 + (NN) -1385 + (LL) 392
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -41418.0 ( -69.61 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: