Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNICPRVNRIVPPCVAYGL----GRAP-------IAPCCRALNDLRFVNTRNLRRAACRCLVGVVSRNP---GL------TQN----------PRFQNI--PRDCRNTFVRPFWWRPRIQCGRINLTDKLIYLDAEE
1BEA Chain:A ((15-108))
--------NPLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADI-------PAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQRGFAATLVTEAECNLAT----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1BEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54349 for 360 contacts (-151.0/contact) +
2D Compatibility (PS) -5964 + (NN) 263 + (LL) 3016
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -58884.0 ( -163.57 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1BEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BEA-query.scw
PDB file :
Tito_Scwrl_1BEA.pdb
: