Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NRALTCGTVNSNVAPCIGYITQ---GGT-------------------LPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGP--NL-------NAGRAAGIPKACGVSVPFPISTNTNCNNVK
1PSY Chain:A ((25-117))
----------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36096 for 446 contacts (-80.9/contact) +
2D Compatibility (PS) -5925 + (NN) 1034 + (LL) 1064
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -44723.0 ( -100.28 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: