Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGQVTSSLAPCIGYLTGN--GAG------------------GVPPGCCGGIKSLNSAAQTTPDRQAACKCIKSAAAGIS--G-I-------NYGIASGLPGKCGVNIPYKISPSTDCNSVK
1PSY Chain:A ((25-121))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36221 for 511 contacts (-70.9/contact) +
2D Compatibility (PS) -6247 + (NN) 1313 + (LL) 1036
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -44119.0 ( -86.34 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: