Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APYTEALSCGQVSSSLAPCISYLTK----GGA---------VPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSIS-G----VNAGNAASFPGKCGVSIPYKISPSTDCSKVQ
1S6D Chain:A ((19-97))
-------------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36905 for 389 contacts (-94.9/contact) +
2D Compatibility (PS) -5981 + (NN) 677 + (LL) 1532
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -44977.0 ( -115.62 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: