Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVSSSLAPCIGYVRGG----GA------------------VPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSIS--G-V-------NPNNAAALPGKCGVNIPYKISASTNCATVK
1PSY Chain:A ((25-121))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27363 for 500 contacts (-54.7/contact) +
2D Compatibility (PS) -6470 + (NN) -97 + (LL) 1368
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -37712.0 ( -75.42 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: