Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--ADAGAGAACEPAQLAVCASAIL-GGTKP-----SGECCGNLRAQQGCLCQYVKD-PN--YGHYVSSPHARDTLNLCGIP-VPHC-----------------------------
1F9M Chain:A ((10-121))
MEAIVGKVTEVNKDTF---WPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15651 for 384 contacts (-40.8/contact) +
2D Compatibility (PS) -7569 + (NN) -3732 + (LL) 392
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -29960.0 ( -78.02 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: