Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----VTCSPLQLSPCAGAITGSGPP-----SATCCSRLREQTPCLCGYYRD-PNLR-QYVNSPNAQKVARTCGVSVRC--------------------------------
1ERV Chain:? ((1-105))
MVKQIE-SKTAFQEALDA--AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEV--KSMPTFQFFKKGQKVGEFSGANKEKLEATINELV
General information:
TITO was launched using:
RESULT:
Template:
1ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10200 for 315 contacts (-32.4/contact) +
2D Compatibility (PS) -6583 + (NN) 408 + (LL) 476
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -19399.0 ( -61.58 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_1ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ERV-query.scw
PDB file :
Tito_Scwrl_1ERV.pdb
: