Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCSDVIKDLRPCVKYLMNG---TG---K---------------PPAACCSGISAIQATASTTADKQAACNCIKSASKQI---N-P-------NPQLAQALPANCGITLPFAVSPNVDCSKIT
1PSY Chain:A ((25-120))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31487 for 484 contacts (-65.1/contact) +
2D Compatibility (PS) -6833 + (NN) -4507 + (LL) 1792
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -44985.0 ( -92.94 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: