Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAACASKLTPCFPFLNNATA---------------QPTADCCNPIKDTVANDLECLCNLYNDP--NLL-S-SLNIT-----VAAALRISRECGVTTDLSACNV
1SM7 Chain:A ((14-106))
------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-IGTCPF
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48703 for 442 contacts (-110.2/contact) +
2D Compatibility (PS) -6573 + (NN) 3034 + (LL) 760
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -56882.0 ( -128.69 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: