Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVVRTLTPCISYVRY---G-G---P---------------LPDNCCNGVKTLYGEAQTSADRQNVCKCIKSAVNGFSYS----N----FNLGLAAGLPGKCGLHLPYTISPSTDCNKVQ
1PSY Chain:A ((25-117))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33962 for 448 contacts (-75.8/contact) +
2D Compatibility (PS) -5984 + (NN) 711 + (LL) 1552
1D Compatibility (HY) -800 + (ID) 750
Total energy: -39233.0 ( -87.57 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: