Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVPCNTVDAKAAACVGFATGK--AT--------KP-----------SAECCTGLQQLAQTVKSVDDKKAICRCLKAAAKSL---G-I-------QDKFLSKIPQACNINVGFPVSINTNCETIH
1PSY Chain:A ((26-120))
---------DLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32463 for 463 contacts (-70.1/contact) +
2D Compatibility (PS) -6334 + (NN) -3119 + (LL) 1784
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -43082.0 ( -93.05 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: