Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQGQGACNAATLQPCLAASKGTAAPTTQCCAAVKNVGGAAGGPQCLCSLTTSALARANGV-NPDAAMA-IPQKCGLAVPKGFTCNNKPVPGS
1HYP Chain:? ((6-80))
-----PSCP--DLSICLNILGGSLGTVDDCCALIGGL------GDIEAIVCLCIQLRALGILNLNRNLQLILNSCGRSYPSNATC-----PRT
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33835 for 478 contacts (-70.8/contact) +
2D Compatibility (PS) -8003 + (NN) -4921 + (LL) 296
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -51813.0 ( -108.40 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: