Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SDACTGLPGLLNCAPFLLGS---VS-------SP-----------DAKCCKSLKWLSQHAINREDKRELCKCLKIEDLK------HKG----VILDRAKALPRLCKVQLPVPLIPDNKDCDKIKAADEE
1PSY Chain:A ((26-121))
--------DLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV------R--DECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQ-----------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10840 for 464 contacts (-23.4/contact) +
2D Compatibility (PS) -6953 + (NN) -6056 + (LL) 1248
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -25451.0 ( -54.85 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: