Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------QDCNGLVTTVISQCSGSYGNGS-------------PPS-AGCCRAARAVSNGCLCPKVTPQIAAAVNKQR------IQAMASACNRPLPRTCGALQF------
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCE-AIKYIAEDQIQQGQLHGEESERVAQRA-GEIVSSCGVRCMRQTRTN
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50341 for 549 contacts (-91.7/contact) +
2D Compatibility (PS) -7949 + (NN) -2359 + (LL) -16
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -62515.0 ( -113.87 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: