Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCPDTDITLTACLSYVAYP---N--PP-P-----------PQPCCDAVLDVTAQARTREDRQAVCSCLKGLMIGIP----GLDL-----TALAALPKVCGANIG--YEISPGMDCSKIN
1W2Q Chain:A ((23-121))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME------NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60637 for 420 contacts (-144.4/contact) +
2D Compatibility (PS) -7390 + (NN) -3616 + (LL) 1100
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -74793.0 ( -178.08 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: