Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHSNKAADRNSHESRKSYMVNLFGDQWKKANQIYQQYLDNALLQNITLNQGVEKMLQTLKSHNIYLAIVSNKKNINLREEVTYFKLDSYFKRVVGSCDTAEDKPSAIPLLFALEESRL-PIDRENVFFVGDSITDILCAQNANCLPIIYGQPISG------YEDLLCFQHFDKLTDFIMKYLKDR
3SD7 Chain:A ((108-239))
---------------------------------------------ENKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDK-D-KVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFEEISESEPTYIVENVESIKDILL------
General information:
TITO was launched using:
RESULT:
Template:
3SD7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75097 for 903 contacts (-83.2/contact) +
2D Compatibility (PS) -13908 + (NN) -8635 + (LL) 3376
1D Compatibility (HY) -8800 + (ID) 1150
Total energy: -104214.0 ( -115.41 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_3SD7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SD7-query.scw
PDB file :
Tito_Scwrl_3SD7.pdb
: