Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLLGV---DNKYYTLSDCCGKNGFIVMFI-CNHCPYVQSIISNLISDVDLLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKEN-------KFTFPYLIDSKQEVAKEYGAVC------TPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG
2PN8 Chain:A ((79-251))
--------YFQSMPAPYWEGTAVIDGEFKELKLTDYRG-KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS-INTEVVACSVDSQ--------FTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVG-------RSVDETLRLVQAFQYTDKHG------EVCPAGWKPGSE
General information:
TITO was launched using:
RESULT:
Template:
2PN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134932 for 1145 contacts (-117.8/contact) +
2D Compatibility (PS) -16984 + (NN) -6490 + (LL) 1480
1D Compatibility (HY) -7600 + (ID) 1000
Total energy: -165526.0 ( -144.56 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_2PN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PN8-query.scw
PDB file :
Tito_Scwrl_2PN8.pdb
: