Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAEGTGF-PHYILNYEEIFKKEVIESFAQT--YIQGKTPIPCIKCNQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGEVKLCRGIDKSKDQSYFLFATTKEQLKLLRFPLGGF-------YKCNVRKLARYFSLPIS---EKPDSQDICFVSENY-SKTIAKLAPQSIQKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIA-Y----S-EPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWLEQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKDEQVIGGGWICS |
| 1VL2 Chain:A ((2-256)) | -----------------KEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQK---------------DDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARP-LIAKRQVEIAEKEGAQYVAHGATGKGNDQ---VRFELTYA----------ALN--PNLKVISPWKDPEFLAKFK--TDLINYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLEDP--AHIPDEDVFTWTVSPKDAPDEETLLEIHFENGIPVKVVNLKDGTEKTDPLELFEYLNEVGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIAHRDLEGITMDKEVMHLRDMLAPKFAELIYNGFWFSPEMEFLLAAFRKAQEN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VL2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98862 for 1681 contacts (-58.8/contact) +
2D Compatibility (PS) -24743 + (NN) -6404 + (LL) 2284
1D Compatibility (HY) -5200 + (ID) 1950
Total energy: -134875.0 ( -80.23 by residue)
QMean score : 0.305
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