Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPDKIIYEGKAKFIIETKDPLTVIQYFKDEVTAFNKEKYKIIEGKGTINNRISTFIMETLEKAGINTHFIKTLSEREQLVKKLKIIPLEIVVRNIAAGSFCKRFNIKEGEKLAFPIIEFFYKNDGLADPMVNENHVLYFGWLSYEEMEEIKTITIKINTVLIDLFLNAGIDLVDLKLEFGRPINDNTKITLADEISPDNCRLWDKNTHKKLDKDVFRLNLGNLKEAYLEVAKRLSVKLC
2GQR Chain:A ((1-236))
MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEFGLYK---GEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSLGGLIEAYEAVARRLGVQLD
General information:
TITO was launched using:
RESULT:
Template:
2GQR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94950 for 1876 contacts (-50.6/contact) +
2D Compatibility (PS) -25181 + (NN) -3765 + (LL) -236
1D Compatibility (HY) -20400 + (ID) 5500
Total energy: -150032.0 ( -79.97 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_2GQR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GQR-query.scw
PDB file :
Tito_Scwrl_2GQR.pdb
: