Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKALNVCYIGSKIKLLIETCANNRENTTQLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGPKLINRIITELSGKVSKLETNNNNFYPINEDAVSALINLGYEKTKVYDTIKKYKPNLDTKDIIRTALKELSNYEIDIMQ
2A1J Chain:B ((29-88))
----------------------------------------------------------------------RVTECLTTVKSVNKTDSQTLLTTFGS---LEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV-------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2A1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54863 for 386 contacts (-142.1/contact) +
2D Compatibility (PS) -6677 + (NN) -5301 + (LL) 8680
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -62711.0 ( -162.46 by residue)
QMean score : 0.742
(partial model without unconserved sides chains):
PDB file :
Tito_2A1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A1J-query.scw
PDB file :
Tito_Scwrl_2A1J.pdb
: