Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVMPDKWIREKAESFGMIEPFVDHKSSKGVMSFGLSSYGYDARVDNKFKIFTNVNSAVVD---PKD--------FSKNSFIDKETDVCIIPPNSFALASTVEYFHIPRDVLAICVGKSTYARCGIIVNVTP--LEPGWKGHVTLEFSNTTPLPAKIYANE--GACQFVFLSGESECEKSYDDIK-GKYMNQHGITLPLVK
2V9X Chain:H ((34-184))
-----------------------------------------DVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLDFYNSGKLPLALRPGMLIGALSFEPLSGPA--VRPYNRREDAKYRNQQGAVASRID
General information:
TITO was launched using:
RESULT:
Template:
2V9X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48492 for 866 contacts (-56.0/contact) +
2D Compatibility (PS) -14864 + (NN) -3197 + (LL) 2600
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -77603.0 ( -89.61 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_2V9X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V9X-query.scw
PDB file :
Tito_Scwrl_2V9X.pdb
: